@prefix llm-wiki-colab: . @prefix skos: . @prefix rdfs: . @prefix rdf: . @prefix owl: . @prefix dcterms: . @prefix xsd: . # ============================================================================= # Vault Ontology — Minimal SKOS + RDFS vocabulary # # Pay-as-you-go: every type and property gets a definition and notation. # No class hierarchy, no reasoning requirements. Evolve as needed. # # This file is the vocabulary source of truth. The skill reads it to # understand what queries are possible. SHACL shapes validate against it. # The @context maps frontmatter syntax to these terms. # ============================================================================= # ============================================================================= # Note Type Classes # # Each type is both rdfs:Class (for rdf:type / sh:targetClass) and # skos:Concept (for definitions, labels, notation). OWL 2 punning # makes this formally sound. # # skos:notation = the frontmatter string value (what users write in YAML) # skos:definition = what this type means # skos:scopeNote = usage guidance # ============================================================================= # --- Knowledge Notes --- llm-wiki-colab:TheoryNote a rdfs:Class, skos:Concept ; skos:prefLabel "Theory Note"@en ; skos:notation "theory-note" ; skos:definition "Theoretical framework or model — claims about how things work."@en ; skos:scopeNote "Typical folder: 03 - Resources/[topic]/"@en . llm-wiki-colab:ConceptNote a rdfs:Class, skos:Concept ; skos:prefLabel "Concept Note"@en ; skos:notation "concept-note" ; skos:definition "Specific concept or idea — a named thing in a domain."@en ; skos:scopeNote "Typical folder: 03 - Resources/[topic]/"@en . llm-wiki-colab:MethodNote a rdfs:Class, skos:Concept ; skos:prefLabel "Method Note"@en ; skos:notation "method-note" ; skos:definition "Methodology, technique, or approach — how to do something."@en ; skos:scopeNote "Typical folder: 03 - Resources/[topic]/Methods/"@en . llm-wiki-colab:Finding a rdfs:Class, skos:Concept ; skos:prefLabel "Finding"@en ; skos:notation "finding" ; skos:definition "Experimental result or empirical observation."@en ; skos:scopeNote "Typical folder: 03 - Resources/[topic]/"@en . llm-wiki-colab:ImplementationNote a rdfs:Class, skos:Concept ; skos:prefLabel "Implementation Note"@en ; skos:notation "implementation-note" ; skos:definition "Code repository, experiment, or system build."@en ; skos:scopeNote "Typical folder: 03 - Resources/[topic]/Implementation/"@en . # --- Literature --- llm-wiki-colab:LiteratureNote a rdfs:Class, skos:Concept ; skos:prefLabel "Literature Note"@en ; skos:notation "literature-note" ; skos:definition "Note about a research paper. Use literatureType: for finer classification."@en ; skos:scopeNote "Typical folder: 03 - Resources/Literature/"@en . llm-wiki-colab:BookNote a rdfs:Class, skos:Concept ; skos:prefLabel "Book Note"@en ; skos:notation "book-note" ; skos:definition "Note about a book, typically from Readwise highlights or manual reading."@en ; skos:scopeNote "Typical folder: 03 - Resources/Literature/"@en . # --- Entities (People and Organizations) --- llm-wiki-colab:Person a rdfs:Class, skos:Concept ; skos:prefLabel "Person"@en ; skos:notation "person" ; skos:definition "A person tracked in the vault — collaborator, contact, or other non-author individual."@en ; skos:scopeNote "Typical folder: 03 - Resources/Literature/ or 03 - Resources/People/. Use for collaborators, contacts, and people known through work rather than authorship."@en . llm-wiki-colab:AuthorNote a rdfs:Class, skos:Concept ; rdfs:subClassOf llm-wiki-colab:Person ; skos:prefLabel "Author Note"@en ; skos:notation "author-note" ; skos:definition "Author profile linking their works across the vault. A person known primarily through their writing, research, or thought leadership."@en ; skos:scopeNote "Typical folder: 03 - Resources/Literature/. Authors are a subclass of Person — they inherit all Person properties and can also be collaborators."@en . llm-wiki-colab:Organization a rdfs:Class, skos:Concept ; skos:prefLabel "Organization"@en ; skos:notation "organization" ; skos:definition "Institution, lab, company, or group. Used for affiliations and institutional context."@en ; skos:scopeNote "Create only for organizations that recur across multiple notes or projects. Examples: Anthropic, CERN, W3C."@en . # --- External --- llm-wiki-colab:ExternalResource a rdfs:Class, skos:Concept ; skos:prefLabel "External Resource"@en ; skos:notation "external-resource" ; skos:definition "Blog post, article, tool review, or other external content."@en ; skos:scopeNote "Typical folder: External Resources/"@en . llm-wiki-colab:Tool a rdfs:Class, skos:Concept ; skos:prefLabel "Tool"@en ; skos:notation "tool" ; skos:definition "Software tool or system description."@en ; skos:scopeNote "Typical folder: External Resources/"@en . # --- Navigation --- llm-wiki-colab:MOC a rdfs:Class, skos:Concept ; skos:prefLabel "Map of Content"@en ; skos:notation "moc" ; skos:definition "Topic hub linking related notes in a domain."@en ; skos:scopeNote "Placed in the relevant topic folder. Listed in VAULT-INDEX.md."@en . llm-wiki-colab:Index a rdfs:Class, skos:Concept ; skos:prefLabel "Index"@en ; skos:notation "index" ; skos:definition "Sub-index or catalog of notes in an area."@en ; skos:scopeNote "Examples: LITERATURE-INDEX.md, EXTERNAL-INDEX.md."@en . # --- Area --- llm-wiki-colab:Area a rdfs:Class, skos:Concept ; skos:prefLabel "Area of Focus"@en ; skos:notation "area" ; skos:definition "Ongoing responsibility with a standard to maintain. Foundation of the Pullein/GAPRA methodology."@en ; skos:scopeNote "Typical folder: 02 - Areas of Focus/. Eight areas defined."@en . # --- Project --- llm-wiki-colab:Project a rdfs:Class, skos:Concept ; skos:prefLabel "Project"@en ; skos:notation "project" ; skos:definition "Time-bound effort serving an area of focus."@en ; skos:scopeNote "Typical folder: 01 - Projects/"@en . llm-wiki-colab:Plan a rdfs:Class, skos:Concept ; skos:prefLabel "Plan"@en ; skos:notation "plan" ; skos:definition "PLAN.md with phases, timeline, and success criteria for a project."@en ; skos:scopeNote "Typical folder: 01 - Projects/[subfolder]/"@en . llm-wiki-colab:Decision a rdfs:Class, skos:Concept ; skos:prefLabel "Decision"@en ; skos:notation "decision" ; skos:definition "Decision log recording architectural or design choices for a project."@en ; skos:scopeNote "Typical folder: 01 - Projects/[subfolder]/"@en . # --- Reference --- llm-wiki-colab:Reference a rdfs:Class, skos:Concept ; skos:prefLabel "Reference"@en ; skos:notation "reference" ; skos:definition "General reference material."@en ; skos:scopeNote "Typical folder: 03 - Resources/Obsidian Reference/"@en . llm-wiki-colab:Workflow a rdfs:Class, skos:Concept ; skos:prefLabel "Workflow"@en ; skos:notation "workflow" ; skos:definition "Documented process or workflow."@en ; skos:scopeNote "Typical folder: 03 - Resources/"@en . llm-wiki-colab:CourseNotes a rdfs:Class, skos:Concept ; skos:prefLabel "Course Notes"@en ; skos:notation "course-notes" ; skos:definition "Notes from a course or tutorial."@en ; skos:scopeNote "Typical folder: Courses/"@en . # --- Other --- llm-wiki-colab:RecipeCollection a rdfs:Class, skos:Concept ; skos:prefLabel "Recipe Collection"@en ; skos:notation "recipe-collection" ; skos:definition "Recipes and cooking notes."@en ; skos:scopeNote "Typical folder: Cooking & Recipes/"@en . llm-wiki-colab:FleetingNote a rdfs:Class, skos:Concept ; skos:prefLabel "Fleeting Note"@en ; skos:notation "fleeting-note" ; skos:definition "Quick capture, unsorted thoughts."@en ; skos:scopeNote "Typical folder: Inbox/"@en . # ============================================================================= # llm-wiki Pattern Type Additions # # Classes used by the llm-wiki-memory-template pattern that are not covered # by the vault's core ontology. Each declares a skos:notation matching the # frontmatter string the llm-wiki SCHEMA uses, so wiki-to-jsonld.py's # TYPE_MAP picks them up automatically. Where a reasonable parent exists in # the core vault ontology, the new class declares rdfs:subClassOf so that # SPARQL queries written against the core classes still find the wiki # variants via simple RDFS inference. # # Source: extension from the llm-wiki-memory-template wiki schema. Candidate # for upstream contribution to agentic-vault if generally useful. # ============================================================================= llm-wiki-colab:Concept a rdfs:Class, skos:Concept ; rdfs:subClassOf llm-wiki-colab:ConceptNote ; skos:prefLabel "Concept (llm-wiki)"@en ; skos:notation "concept" ; skos:definition "A page describing a single concept, idea, or object. The llm-wiki SCHEMA's general-purpose concept type."@en ; skos:scopeNote "Subclass of ConceptNote so SPARQL queries against llm-wiki-colab:ConceptNote still match."@en . llm-wiki-colab:Entity a rdfs:Class, skos:Concept ; skos:prefLabel "Entity (llm-wiki)"@en ; skos:notation "entity" ; skos:definition "A page about a named entity (person, organisation, system, dataset) where the specific subtype is unspecified or mixed."@en ; skos:scopeNote "No subClassOf declared because the core vault ontology has sibling classes (Person, Organization, AuthorNote) rather than a single Entity superclass."@en . llm-wiki-colab:SourceSummary a rdfs:Class, skos:Concept ; rdfs:subClassOf llm-wiki-colab:LiteratureNote ; skos:prefLabel "Source Summary (llm-wiki)"@en ; skos:notation "source-summary" ; skos:definition "A summary of an external source (paper, book, web page, talk) maintained as a wiki page."@en ; skos:scopeNote "Subclass of LiteratureNote so SPARQL queries against llm-wiki-colab:LiteratureNote still match."@en . llm-wiki-colab:Synthesis a rdfs:Class, skos:Concept ; skos:prefLabel "Synthesis (llm-wiki)"@en ; skos:notation "synthesis" ; skos:definition "A page combining findings, claims, or framings from multiple other pages into a new statement. Distinct from Finding (a single empirical observation) and from Comparison (a structured contrast)."@en ; skos:scopeNote "No direct parent in the core vault ontology; new top-level class for the llm-wiki pattern."@en . llm-wiki-colab:Comparison a rdfs:Class, skos:Concept ; skos:prefLabel "Comparison (llm-wiki)"@en ; skos:notation "comparison" ; skos:definition "A page systematically comparing two or more other pages or concepts on shared dimensions."@en ; skos:scopeNote "No direct parent in the core vault ontology; new top-level class for the llm-wiki pattern."@en . # ============================================================================= # Edge Field Properties # # Relationship types used in Breadcrumbs frontmatter. # Domain/range use owl:unionOf where multiple types are valid. # "any" domain/range = no constraint declared (omitted). # ============================================================================= # --- Hierarchy --- llm-wiki-colab:up a rdf:Property ; rdfs:label "up"@en ; skos:definition "Parent in the vault hierarchy. Points to the MOC, index, or area this note belongs under."@en ; rdfs:range [ owl:unionOf ( llm-wiki-colab:MOC llm-wiki-colab:Index llm-wiki-colab:Area ) ] ; skos:editorialNote "Transitive closure materialized by build-graph.sh via CONSTRUCT query."@en . llm-wiki-colab:area a rdf:Property ; rdfs:label "area"@en ; skos:definition "Area of focus this note serves. Connects projects and MOCs to one of eight Pullein areas."@en ; rdfs:domain [ owl:unionOf ( llm-wiki-colab:Project llm-wiki-colab:MOC ) ] ; rdfs:range llm-wiki-colab:Area . # --- Intellectual Structure --- llm-wiki-colab:concept a rdf:Property ; rdfs:label "concept"@en ; skos:definition "Concept discussed or realized by this note. Links literature and implementations to the concepts they address."@en ; rdfs:domain [ owl:unionOf ( llm-wiki-colab:LiteratureNote llm-wiki-colab:BookNote llm-wiki-colab:ImplementationNote llm-wiki-colab:ExternalResource ) ] ; rdfs:range [ owl:unionOf ( llm-wiki-colab:ConceptNote llm-wiki-colab:TheoryNote llm-wiki-colab:MethodNote ) ] ; owl:inverseOf llm-wiki-colab:conceptOf . llm-wiki-colab:conceptOf a rdf:Property ; rdfs:label "concept of"@en ; skos:definition "Inverse of concept. Materialized: if A concept B, then B conceptOf A."@en ; owl:inverseOf llm-wiki-colab:concept ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:source a rdf:Property ; rdfs:label "source"@en ; skos:definition "Literature source cited by this note."@en ; rdfs:range [ owl:unionOf ( llm-wiki-colab:LiteratureNote llm-wiki-colab:BookNote ) ] . llm-wiki-colab:extends a rdf:Property ; rdfs:label "extends"@en ; skos:definition "Builds upon another concept or theory. Indicates intellectual lineage."@en ; rdfs:domain [ owl:unionOf ( llm-wiki-colab:TheoryNote llm-wiki-colab:ConceptNote llm-wiki-colab:MethodNote ) ] ; rdfs:range [ owl:unionOf ( llm-wiki-colab:TheoryNote llm-wiki-colab:ConceptNote llm-wiki-colab:MethodNote ) ] . llm-wiki-colab:supports a rdf:Property ; rdfs:label "supports"@en ; skos:definition "Validates or provides evidence for the target claim."@en ; owl:inverseOf llm-wiki-colab:supportedBy . llm-wiki-colab:supportedBy a rdf:Property ; rdfs:label "supported by"@en ; skos:definition "Inverse of supports. Materialized: if A supports B, then B supportedBy A."@en ; owl:inverseOf llm-wiki-colab:supports ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:criticizes a rdf:Property ; rdfs:label "criticizes"@en ; skos:definition "Challenges or opposes the target claim."@en ; owl:inverseOf llm-wiki-colab:criticizedBy . llm-wiki-colab:criticizedBy a rdf:Property ; rdfs:label "criticized by"@en ; skos:definition "Inverse of criticizes. Materialized: if A criticizes B, then B criticizedBy A."@en ; owl:inverseOf llm-wiki-colab:criticizes ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:implementation a rdf:Property ; rdfs:label "implementation"@en ; skos:definition "Code or system implementing this concept or theory."@en ; rdfs:domain [ owl:unionOf ( llm-wiki-colab:ConceptNote llm-wiki-colab:TheoryNote llm-wiki-colab:MethodNote ) ] ; rdfs:range llm-wiki-colab:ImplementationNote . llm-wiki-colab:related a rdf:Property ; rdfs:label "related"@en ; skos:definition "Lateral connection between notes. Prefer specific edge fields (extends, supports, criticizes, concept) when a more precise relationship applies."@en ; skos:editorialNote "Symmetric by convention. Catch-all — use sparingly."@en . # --- Entity Relationships --- llm-wiki-colab:author a rdf:Property ; rdfs:label "author"@en ; skos:definition "Person who authored this work. Creates a typed edge from literature/book/external-resource to the author's Person or AuthorNote."@en ; rdfs:domain [ owl:unionOf ( llm-wiki-colab:LiteratureNote llm-wiki-colab:BookNote llm-wiki-colab:ExternalResource ) ] ; rdfs:range llm-wiki-colab:Person ; owl:inverseOf llm-wiki-colab:authorOf . llm-wiki-colab:authorOf a rdf:Property ; rdfs:label "author of"@en ; skos:definition "Inverse of author. Materialized: if A has author B, then B authorOf A."@en ; owl:inverseOf llm-wiki-colab:author ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:affiliation a rdf:Property ; rdfs:label "affiliation"@en ; skos:definition "Organization a person is affiliated with."@en ; rdfs:domain llm-wiki-colab:Person ; rdfs:range llm-wiki-colab:Organization . llm-wiki-colab:collaborator a rdf:Property ; rdfs:label "collaborator"@en ; skos:definition "Person collaborating on this project."@en ; rdfs:domain llm-wiki-colab:Project ; rdfs:range llm-wiki-colab:Person . # ============================================================================= # Annotation Properties (non-edge) # # Properties that appear in frontmatter but don't create typed relationships # between notes. Used for metadata. # ============================================================================= llm-wiki-colab:tag a rdf:Property ; rdfs:label "tag"@en ; skos:definition "Frontmatter tag value. Tags are flat strings, not typed relationships."@en . llm-wiki-colab:status a rdf:Property ; rdfs:label "status"@en ; skos:definition "Lifecycle status of a note (e.g., active, draft, archived)."@en . llm-wiki-colab:timeline a rdf:Property ; rdfs:label "timeline"@en ; skos:definition "Expected timeline for a project."@en . # ============================================================================= # Materialized Properties # # Properties computed by build-graph.sh materialization rules. # Not asserted in frontmatter. Declared here for agent comprehension. # ============================================================================= llm-wiki-colab:isHub a rdf:Property ; rdfs:label "is hub"@en ; skos:definition "Boolean flag materialized on notes with 10 or more inbound relationship edges. Indicates a navigation hub or key concept."@en ; rdfs:range xsd:boolean ; skos:editorialNote "Materialized by build-graph.sh hub detection rule."@en . # ============================================================================= # llm-wiki Pattern Edge Additions # # Forward predicates are author-facing (used in frontmatter or in inline # Pandoc-style {rel="..."} annotations). Inverse predicates are materialized # by build-graph.sh CONSTRUCT queries, not asserted in source documents. # Candidate for upstream contribution to agentic-vault if generally useful. # ============================================================================= llm-wiki-colab:partOf a rdf:Property ; rdfs:label "part of"@en ; skos:definition "This page is a structural component or stage of the target page (a larger composite). E.g. Procedural-Memory partOf Three-Stage-Methodology."@en ; owl:inverseOf llm-wiki-colab:hasPart . llm-wiki-colab:hasPart a rdf:Property ; rdfs:label "has part"@en ; skos:definition "Inverse of partOf. Materialized: if A partOf B, then B hasPart A."@en ; owl:inverseOf llm-wiki-colab:partOf ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:dependsOn a rdf:Property ; rdfs:label "depends on"@en ; skos:definition "This page's design or claim depends on the target page being in place (architectural, logical, or argumentative dependency). Distinct from extends (intellectual lineage)."@en ; owl:inverseOf llm-wiki-colab:prerequisiteOf . llm-wiki-colab:prerequisiteOf a rdf:Property ; rdfs:label "prerequisite of"@en ; skos:definition "Inverse of dependsOn. Materialized: if A dependsOn B, then B prerequisiteOf A."@en ; owl:inverseOf llm-wiki-colab:dependsOn ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:defines a rdf:Property ; rdfs:label "defines"@en ; skos:definition "This page is the canonical definition source for the target. Distinct from concept (which is 'discusses' or 'is about')."@en ; owl:inverseOf llm-wiki-colab:definedBy . llm-wiki-colab:definedBy a rdf:Property ; rdfs:label "defined by"@en ; skos:definition "Inverse of defines. Materialized: if A defines B, then B definedBy A."@en ; owl:inverseOf llm-wiki-colab:defines ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:resolvedBy a rdf:Property ; rdfs:label "resolved by"@en ; skos:definition "An open question, gap, or concern raised by this page is answered or addressed by the target page."@en ; owl:inverseOf llm-wiki-colab:resolves . llm-wiki-colab:resolves a rdf:Property ; rdfs:label "resolves"@en ; skos:definition "Inverse of resolvedBy. Materialized: if A resolvedBy B, then B resolves A."@en ; owl:inverseOf llm-wiki-colab:resolvedBy ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:incorporatedInto a rdf:Property ; rdfs:label "incorporated into"@en ; skos:definition "Content from this page (a passage, a recommendation, a methodology section) appears in or has been adopted by the target page. The staging-document pattern."@en ; owl:inverseOf llm-wiki-colab:incorporates . llm-wiki-colab:incorporates a rdf:Property ; rdfs:label "incorporates"@en ; skos:definition "Inverse of incorporatedInto. Materialized: if A incorporatedInto B, then B incorporates A."@en ; owl:inverseOf llm-wiki-colab:incorporatedInto ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:precedes a rdf:Property ; rdfs:label "precedes"@en ; skos:definition "This page precedes the target in a sequence (version history, stage progression, phase). E.g. Phase-I-Proposal precedes Phase-II-Proposal; Procedural-Memory precedes Iterative-Ontology-Evolution."@en ; owl:inverseOf llm-wiki-colab:precededBy . llm-wiki-colab:precededBy a rdf:Property ; rdfs:label "preceded by"@en ; skos:definition "Inverse of precedes. Materialized: if A precedes B, then B precededBy A."@en ; owl:inverseOf llm-wiki-colab:precedes ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:feedsInto a rdf:Property ; rdfs:label "feeds into"@en ; skos:definition "Content, signals, or data from this page flow into the target (data pipeline / system component relationship). Distinct from supports (evidence for a claim) and dependsOn (architectural prerequisite)."@en ; owl:inverseOf llm-wiki-colab:informedBy . llm-wiki-colab:informedBy a rdf:Property ; rdfs:label "informed by"@en ; skos:definition "Inverse of feedsInto. Materialized: if A feedsInto B, then B informedBy A."@en ; owl:inverseOf llm-wiki-colab:feedsInto ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en . llm-wiki-colab:outOfScopeFor a rdf:Property ; rdfs:label "out of scope for"@en ; skos:definition "This page's content is explicitly NOT to appear in the target page. Useful for keeping speculative or exploratory material cleanly separated from formal deliverables (proposals, specifications)."@en ; owl:inverseOf llm-wiki-colab:excludes . llm-wiki-colab:excludes a rdf:Property ; rdfs:label "excludes"@en ; skos:definition "Inverse of outOfScopeFor. Materialized: if A outOfScopeFor B, then B excludes A."@en ; owl:inverseOf llm-wiki-colab:outOfScopeFor ; skos:editorialNote "Materialized by build-graph.sh. Not asserted in frontmatter."@en .